Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample type
cell line
cell line
MCF-7
sex
female
health state
breast cancer (adenocarcinoma)
dev_stage
adult
age
69 year
donor ID
ENCDO000AAE
lab
Richard Myers, HAIB
passage number
6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
51134593
Reads aligned (%)
86.7
Duplicates removed (%)
4.0
Number of peaks
1629 (qval < 1E-05)

hg19

Number of total reads
51134593
Reads aligned (%)
86.1
Duplicates removed (%)
5.3
Number of peaks
1603 (qval < 1E-05)

Base call quality data from DBCLS SRA