Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ETS2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample type
cell line
cell line
K562
sex
female
health state
chronic myelogenous leukemia (CML)
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Kevin White, UChicago
passage number
4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/bce258b2-251a-439d-928f-dbd4b250904b/@@download/attachment/Chicago%20ChIP-seq%20Branson%20TruSeq%20Protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
50066223
Reads aligned (%)
97.8
Duplicates removed (%)
32.6
Number of peaks
1346 (qval < 1E-05)

hg19

Number of total reads
50066223
Reads aligned (%)
97.0
Duplicates removed (%)
33.1
Number of peaks
556 (qval < 1E-05)

Base call quality data from DBCLS SRA