Antigen

Antigen Class

TFs and others

Antigen

SRF

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

sex

female

cell line

GM12878

lab

Michael Snyder, Stanford

sample_type

immortalized cell line

health state

unknown

age

unknown

donor ID

ENCDO000AAK

dev_stage

adult

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

65969109

Reads aligned (%)

69.1

Duplicates removed (%)

31.5

Number of peaks

7713 (qval < 1E-05)

hg19

Number of total reads

65969109

Reads aligned (%)

68.4

Duplicates removed (%)

31.7

Number of peaks

7452 (qval < 1E-05)