SRX5446064
k562 WT input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

isolate
k562_WT_input
age
50
biomaterial_provider
Omar Abdel-Wahab MSKCC HOPP 1275 York Ave New York NY
sex
male
tissue
cell lines
cell_line
K562

Sequenced DNA Library

library_name
k562_WT_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53635270
Reads aligned (%)
98.0
Duplicates removed (%)
5.4
Number of peaks
1490 (qval < 1E-05)

hg19

Number of total reads
53635270
Reads aligned (%)
97.0
Duplicates removed (%)
7.1
Number of peaks
1353 (qval < 1E-05)

Base call quality data from DBCLS SRA