Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CPSF3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cells
cell line
HeLa cells
molecule subtype
CPSF73 bound DNA
genotype/treatment
siLUC control for knock-down (5 nM)
antibody
Rabbit polyclonal anti-CPSF73 Bethyl Cat# A301-091A
calibration
Drosophila spike-in

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
59269724
Reads aligned (%)
45.2
Duplicates removed (%)
69.8
Number of peaks
544 (qval < 1E-05)

hg38

Number of total reads
59269724
Reads aligned (%)
46.7
Duplicates removed (%)
69.0
Number of peaks
658 (qval < 1E-05)

Base call quality data from DBCLS SRA