Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARNTL

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
mammary gland/breast; derived from metastatic site: pleural effusion
cell line
MDA-MB-231
culture properties
adherent
disease
adenocarcinoma
antibody
Bmal1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
18102741
Reads aligned (%)
87.9
Duplicates removed (%)
5.6
Number of peaks
916 (qval < 1E-05)

hg38

Number of total reads
18102741
Reads aligned (%)
90.1
Duplicates removed (%)
4.1
Number of peaks
823 (qval < 1E-05)

Base call quality data from DBCLS SRA