Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JARID2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NT2-D1
Tissue
testis
Lineage
inner cell mass
Description
malignant pluripotent embryonal carcinoma (NTera-2), "The NTERA-2 cl.D1 cell line is a pluripotent human testicular embryonal carcinoma cell line derived by cloning the NTERA-2 cell line." - ATCC. (PMID: 6694356)

Attributes by original data submitter

Sample

source_name
Embryonic stem cell and NT2 cell line
cell type
Embryonic stem cell and NT2 cell line
genotype
Wild type
antibody
JARID2

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
19548893
Reads aligned (%)
6.3
Duplicates removed (%)
12.7
Number of peaks
3963 (qval < 1E-05)

hg38

Number of total reads
19548893
Reads aligned (%)
6.5
Duplicates removed (%)
9.6
Number of peaks
3939 (qval < 1E-05)

Base call quality data from DBCLS SRA