Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
dmCas9-ChIPseq No sgRNA WCE
cell line
Arf −/− MEFs
cell type
mouse embryonic fibroblasts
antibody
No antibody

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Protein-DNA complexes were immunoprecipitated from sonicated chromatin extract with anti-FLAG antibody. NEBNext ChIP-Seq Library Prep Reagent Set for Illumina (E6200S, NEB) according to the manufacturer's protocol. For BARCODE ChIP-seq library we used the BARCODE adaptor for generating the library (BARCODE adaptor: PMID 19159457).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
27255805
Reads aligned (%)
96.8
Duplicates removed (%)
12.4
Number of peaks
493 (qval < 1E-05)

mm9

Number of total reads
27255805
Reads aligned (%)
96.5
Duplicates removed (%)
12.4
Number of peaks
566 (qval < 1E-05)

Base call quality data from DBCLS SRA