SRX5416008
GSM3619375: s2-WDR5 RRC03082; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
WDR5

Cell type

Cell type Class
Liver
Cell type
SMMC-7721
NA
NA

Attributes by original data submitter

Sample

source_name
hepatocellular
cell line
SMMC-7721
cell type
hepatocellular carcinoma cell line
infect
lentivirus
chip antibody
WDR5 (NOVAS, Cat# NBP1-30063)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and isolated with antibody. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19084869
Reads aligned (%)
89.2
Duplicates removed (%)
21.7
Number of peaks
27428 (qval < 1E-05)

hg19

Number of total reads
19084869
Reads aligned (%)
88.2
Duplicates removed (%)
23.4
Number of peaks
26313 (qval < 1E-05)

Base call quality data from DBCLS SRA