SRX5416007
GSM3619374: s2-PTEN-L RRC03084; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PTEN

Cell type

Cell type Class
Liver
Cell type
SMMC-7721
NA
NA

Attributes by original data submitter

Sample

source_name
hepatocellular
cell line
SMMC-7721
cell type
hepatocellular carcinoma cell line
infect
lentivirus
chip antibody
PTENα/β (a gift from Professor Yuxin Yin)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and isolated with antibody. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
22252837
Reads aligned (%)
100.0
Duplicates removed (%)
43.7
Number of peaks
26921 (qval < 1E-05)

hg38

Number of total reads
22252837
Reads aligned (%)
103.5
Duplicates removed (%)
42.2
Number of peaks
27639 (qval < 1E-05)

Base call quality data from DBCLS SRA