Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
PC3
chip antibody
IgG Abcam (#ab37415)
cell line
PC3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were extracted using ALKBH3 or IgG antibodies and subsequent purified. Libraries were constructed of 50 ng of ChIP DNA following Illumina’s® protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
25193254
Reads aligned (%)
91.5
Duplicates removed (%)
77.0
Number of peaks
204 (qval < 1E-05)

hg19

Number of total reads
25193254
Reads aligned (%)
90.7
Duplicates removed (%)
79.2
Number of peaks
276 (qval < 1E-05)

Base call quality data from DBCLS SRA