Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D MTVL WT (Ctrl)
cell type
Mammary epithelial cells
cell line
T47D MTVL WT cells (used as control in this work)
chip antibody
anti-PR, H-190, sc-7208, Santa Cruz Biotechnology
agent
R5020 (10 nM)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
87706387
Reads aligned (%)
84.0
Duplicates removed (%)
14.5
Number of peaks
49250 (qval < 1E-05)

hg38

Number of total reads
87706387
Reads aligned (%)
86.0
Duplicates removed (%)
13.1
Number of peaks
49742 (qval < 1E-05)

Base call quality data from DBCLS SRA