Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D A1/2 cells
cell type
Mammary epithelial cells
cell line
T47D A1/2 cells
chip antibody
anti-PR, H-190, sc-7208, Santa Cruz Biotechnology
agent
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
57924322
Reads aligned (%)
86.9
Duplicates removed (%)
10.8
Number of peaks
1854 (qval < 1E-05)

hg38

Number of total reads
57924322
Reads aligned (%)
89.3
Duplicates removed (%)
9.1
Number of peaks
1962 (qval < 1E-05)

Base call quality data from DBCLS SRA