SRX540017
VCaP IP TEAD4-1 Chip-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

sex
male
tissue
prostate
cell_line
VCaP
cell_type
epithelial
isolate
VCaP tumorigenic prostate cancer cell line
sample_type
cell culture
treatment
VCaP gDNA immunoprepitated with anti TEAD4 antibody. .
biomaterial_provider
ATCC
age
59
disease
prostate cancer
race
Caucasian

Sequenced DNA Library

library_name
VCaP_IP_TEAD4-1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
62105503
Reads aligned (%)
92.6
Duplicates removed (%)
1.1
Number of peaks
31830 (qval < 1E-05)

hg19

Number of total reads
62105503
Reads aligned (%)
91.5
Duplicates removed (%)
1.4
Number of peaks
30846 (qval < 1E-05)

Base call quality data from DBCLS SRA