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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: VCaP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX540016
VCaP IP ERG-2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
sex
male
tissue
prostate
cell_line
VCaP
cell_type
epithelial
isolate
VCaP tumorigenic prostate cancer cell line
sample_type
cell culture
treatment
VCaP gDNA immunoprepitated with anti ERG antibody. .
biomaterial_provider
ATCC
age
59
disease
prostate cancer
race
Caucasian
Sequenced DNA Library
library_name
VCaP_IP_ERG-2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
55750230
Reads aligned (%)
93.1
Duplicates removed (%)
0.7
Number of peaks
24086 (qval < 1E-05)
hg19
Number of total reads
55750230
Reads aligned (%)
92.3
Duplicates removed (%)
0.9
Number of peaks
23565 (qval < 1E-05)
Base call quality data from
DBCLS SRA