Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

sex
male
tissue
prostate
cell_line
VCaP
cell_type
epithelial
isolate
VCaP tumorigenic prostate cancer cell line
sample_type
cell culture
treatment
VCaP gDNA immunoprepitated with anti ERG antibody. .
biomaterial_provider
ATCC
age
59
disease
prostate cancer
race
Caucasian

Sequenced DNA Library

library_name
VCaP_IP_ERG-2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
55750230
Reads aligned (%)
93.1
Duplicates removed (%)
0.7
Number of peaks
24086 (qval < 1E-05)

hg19

Number of total reads
55750230
Reads aligned (%)
92.3
Duplicates removed (%)
0.9
Number of peaks
23565 (qval < 1E-05)

Base call quality data from DBCLS SRA