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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: BRD3
wikigenes
PDBj
CellType: hESC H1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5385026
GSM3610700: H1 BRD3IP rep2: BRD3 ChIP-seq H1 hESC; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
BRD3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA
Attributes by original data submitter
Sample
source_name
BRD3 H1 human Embryonic stem cells (hESC)
cell type
H1 human Embryonic stem cells (hESC)
state
Cultured in mTESR1
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
BRD3 ChIP was pefromed using an anti-BRD3 (Bethyl A302-368A) ChIP-seq libraries were prepared according to instructions accompanying the NEBNext Ultra DNA Library Prep Kit for Illumina.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
23841770
Reads aligned (%)
94.8
Duplicates removed (%)
3.5
Number of peaks
10733 (qval < 1E-05)
hg38
Number of total reads
23841770
Reads aligned (%)
96.2
Duplicates removed (%)
2.5
Number of peaks
10871 (qval < 1E-05)
Base call quality data from
DBCLS SRA