SRX5385026
GSM3610700: H1 BRD3IP rep2: BRD3 ChIP-seq H1 hESC; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
BRD3 H1 human Embryonic stem cells (hESC)
cell type
H1 human Embryonic stem cells (hESC)
state
Cultured in mTESR1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
BRD3 ChIP was pefromed using an anti-BRD3 (Bethyl A302-368A) ChIP-seq libraries were prepared according to instructions accompanying the NEBNext Ultra DNA Library Prep Kit for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
23841770
Reads aligned (%)
94.8
Duplicates removed (%)
3.5
Number of peaks
10733 (qval < 1E-05)

hg38

Number of total reads
23841770
Reads aligned (%)
96.2
Duplicates removed (%)
2.5
Number of peaks
10871 (qval < 1E-05)

Base call quality data from DBCLS SRA