Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Kidney
Cell type
iSLK
NA
NA

Attributes by original data submitter

Sample

source_name
Cell culture
cell line
iSLK
latent infection
WT BAC16
time point
48 hr
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were lysed, nuclei were isolated and sonicated to fragment chromatin which was used for immunoprecipitation with the indicated antibody. Libraries were prepared using the Swift Biosciences protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
95718103
Reads aligned (%)
86.2
Duplicates removed (%)
9.1
Number of peaks
1914 (qval < 1E-05)

hg19

Number of total reads
95718103
Reads aligned (%)
85.4
Duplicates removed (%)
10.1
Number of peaks
1188 (qval < 1E-05)

Base call quality data from DBCLS SRA