Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

isolate
deidentified sample obtained from UMASS biobank
age
29-3
biomaterial_provider
UMMS Tissue and Tumor Bank
sex
male
tissue
testis

Sequenced DNA Library

library_name
Human-ChIPseq-H3K4me3_input-A17
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
44327843
Reads aligned (%)
93.8
Duplicates removed (%)
19.4
Number of peaks
27953 (qval < 1E-05)

hg19

Number of total reads
44327843
Reads aligned (%)
93.4
Duplicates removed (%)
19.9
Number of peaks
27681 (qval < 1E-05)

Base call quality data from DBCLS SRA