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Install and launch IGV before selecting data to visualize
For rn6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For rn6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For rn6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: INS-1E
ATCC
MeSH
RIKEN BRC
SRX5375046
GSM3604488: H3AcK27CONUSi; Rattus norvegicus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Pancreas
Cell type
INS-1E
Primary Tissue
Pancreas
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
H3AcK27_ChIPseq
cell line
INS-1
cell type
insulinoma cells
sample treatment
Ad-Usi (non-specific shRNA)
chip antibody
rabbit anti-H3AcK27 (Abcam ab4729)
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
rn6
Number of total reads
7480680
Reads aligned (%)
93.0
Duplicates removed (%)
4.5
Number of peaks
23373 (qval < 1E-05)
Base call quality data from
DBCLS SRA