Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NFKB1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary blood
individual
donor 171
cell type
CD4pos_T
lineage
CD4
chip antibody
p50 (#3035, Cell Signaling, Danvers, MA, USA)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
64535998
Reads aligned (%)
88.7
Duplicates removed (%)
9.7
Number of peaks
4531 (qval < 1E-05)

hg19

Number of total reads
64535998
Reads aligned (%)
87.6
Duplicates removed (%)
9.8
Number of peaks
3703 (qval < 1E-05)

Base call quality data from DBCLS SRA