Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
HCC70
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
triple-negative breast cancer cells
cell line
HCC70
passages
6-9
treatment
XY018
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's paired-end DNA sample Prep kit.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
26255419
Reads aligned (%)
96.1
Duplicates removed (%)
2.0
Number of peaks
719 (qval < 1E-05)

hg19

Number of total reads
26255419
Reads aligned (%)
95.5
Duplicates removed (%)
3.4
Number of peaks
780 (qval < 1E-05)

Base call quality data from DBCLS SRA