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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX5352612
ChIP-Seqof k562
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
isolate
edited cells
age
not applicable
biomaterial_provider
Berkeley Tissue Culture Facility
sex
female
tissue
not applicable
cell_line
K562
cell_subtype
13
treatment
BW16_hg38_k562_vegfa_mre11
Sequenced DNA Library
library_name
BW16_hg38_k562_vegfa_mre11
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
16909814
Reads aligned (%)
91.3
Duplicates removed (%)
10.7
Number of peaks
587 (qval < 1E-05)
hg19
Number of total reads
16909814
Reads aligned (%)
90.2
Duplicates removed (%)
10.9
Number of peaks
283 (qval < 1E-05)
Base call quality data from
DBCLS SRA