Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

isolate
edited cells
age
not applicable
biomaterial_provider
Berkeley Tissue Culture Facility
sex
female
tissue
not applicable
cell_line
K562
cell_subtype
10
treatment
BW16_hg38_k562_vegfa_fd2

Sequenced DNA Library

library_name
BW16_hg38_k562_vegfa_fd2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina MiSeq

hg38

Number of total reads
14655320
Reads aligned (%)
92.5
Duplicates removed (%)
9.8
Number of peaks
2412 (qval < 1E-05)

hg19

Number of total reads
14655320
Reads aligned (%)
91.4
Duplicates removed (%)
10.1
Number of peaks
2016 (qval < 1E-05)

Base call quality data from DBCLS SRA