SRX5352589
ChIP-Seqof k562

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

isolate
edited cells
age
not applicable
biomaterial_provider
Berkeley Tissue Culture Facility
sex
female
tissue
not applicable
cell_line
K562
cell_subtype
28
treatment
BW42_mre11_k562_vegfa_xl_16h

Sequenced DNA Library

library_name
BW42_mre11_k562_vegfa_xl_16h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43139816
Reads aligned (%)
80.0
Duplicates removed (%)
10.3
Number of peaks
1343 (qval < 1E-05)

hg19

Number of total reads
43139816
Reads aligned (%)
78.9
Duplicates removed (%)
10.7
Number of peaks
541 (qval < 1E-05)

Base call quality data from DBCLS SRA