SRX5352587
ChIP-Seqof k562

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

isolate
edited cells
age
not applicable
biomaterial_provider
Berkeley Tissue Culture Facility
sex
female
tissue
not applicable
cell_line
K562
cell_subtype
22
treatment
BW27_k562_rnf2

Sequenced DNA Library

library_name
BW27_k562_rnf2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14473633
Reads aligned (%)
82.2
Duplicates removed (%)
24.6
Number of peaks
384 (qval < 1E-05)

hg19

Number of total reads
14473633
Reads aligned (%)
81.2
Duplicates removed (%)
25.0
Number of peaks
183 (qval < 1E-05)

Base call quality data from DBCLS SRA