Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
background
Epitheloid cervix carcinoma
condition
DMEM
antibody
Millipore 04-745
minute-pool
Pool1
supplementary file scaling
-

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell lysis immediately followed by MNase digestion of native chromatin, T7-adapter ligation, pool-and-split multiplexing, immunoprecipitation and magnetic bead isolation of immunoprecipitated DNA. Illumnina library preparation by in vitro transcription, reverse transcription and library PCR (see manuscript).

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
1040153
Reads aligned (%)
72.4
Duplicates removed (%)
0.9
Number of peaks
10 (qval < 1E-05)

hg19

Number of total reads
1040153
Reads aligned (%)
72.1
Duplicates removed (%)
1.0
Number of peaks
13 (qval < 1E-05)

Base call quality data from DBCLS SRA