Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Blood
Cell type
RAMOS
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
ChIP-seq HA-WT-3E7-MYC
cell line
Ramos
cell type
Burkitt's lymphoma cell line
genotype/variation
Myc WT-HA
treatment
20 nM 4-OHT for 24 hours
chip antibody
HA (C29F4 from Cell Signaling)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
59031751
Reads aligned (%)
88.0
Duplicates removed (%)
6.2
Number of peaks
16461 (qval < 1E-05)

hg38

Number of total reads
59031751
Reads aligned (%)
89.7
Duplicates removed (%)
5.1
Number of peaks
16697 (qval < 1E-05)

Base call quality data from DBCLS SRA