Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HSP90B1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell line
K562
chip antibody
HSP90B Abcam (ab53497)
condition
Control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin preparation for K652 was performed according to Arrigoni et al., 2016 (Arrigoni, Richter et al. 2016). Chromatin Immunoprecipitation was performed as previously described (Lee, Johnstone et al. 2006).

Sequencing Platform

instrument_model
Illumina HiSeq 3000

hg19

Number of total reads
8199880
Reads aligned (%)
125.8
Duplicates removed (%)
15.0
Number of peaks
476 (qval < 1E-05)

hg38

Number of total reads
8199880
Reads aligned (%)
126.2
Duplicates removed (%)
14.9
Number of peaks
488 (qval < 1E-05)

Base call quality data from DBCLS SRA