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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Ovary
ATCC
MeSH
RIKEN BRC
SRX5309720
Rhi ChIP in cuff mut expressing sim-cuff ovary replicate 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Adult
Cell type
Ovary
NA
NA
Attributes by original data submitter
Sample
strain
w[1]/+; cuff[KG]/cuff[WM]; rhiP-GFP-sim-cuff/+
age
2-4 days
sex
female
tissue
ovary
sample_type
DNA
custom name
Rhi ChIP from cuff mut; rhiP-GFP-sim-cuff ovary
Sequenced DNA Library
library_name
Rhi ChIP in cuff mut expressing sim-cuff ovary replicate 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
14947345
Reads aligned (%)
37.4
Duplicates removed (%)
43.4
Number of peaks
561 (qval < 1E-05)
dm3
Number of total reads
14947345
Reads aligned (%)
38.4
Duplicates removed (%)
41.4
Number of peaks
322 (qval < 1E-05)
Base call quality data from
DBCLS SRA