SRX5309719
GFP-Cuff ChIP in cuff mut expressing sim-cuff ovary replicate 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

strain
w[1]/+; cuff[KG]/cuff[WM]; rhiP-GFP-sim-cuff/+
age
2-4 days
sex
female
tissue
ovary
sample_type
DNA
custom name
GFP ChIP from cuff mut; rhiP-GFP-sim-cuff ovary

Sequenced DNA Library

library_name
GFP-Cuff ChIP in cuff mut expressing sim-cuff ovary replicate 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
14509923
Reads aligned (%)
60.4
Duplicates removed (%)
36.8
Number of peaks
874 (qval < 1E-05)

dm3

Number of total reads
14509923
Reads aligned (%)
61.1
Duplicates removed (%)
35.6
Number of peaks
783 (qval < 1E-05)

Base call quality data from DBCLS SRA