SRX530902
GSM1377538: ChIP E4F1 in primary MEF; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
E4f1

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF, E4F1 ChIP
strain/background
mixed (C57BL/6; 129Sv/J)
tissue
13.5-day embryo
cell type
primary mouse embryonic fibroblasts
chip antibody
rabbit polyclonal anti-E4F1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Input and immunoprecipitated DNA were purified and prepared for Illumina/Solexa sequencing following their standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
113835580
Reads aligned (%)
93.3
Duplicates removed (%)
66.8
Number of peaks
1229 (qval < 1E-05)

mm9

Number of total reads
113835580
Reads aligned (%)
93.0
Duplicates removed (%)
66.8
Number of peaks
1310 (qval < 1E-05)

Base call quality data from DBCLS SRA