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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: E4f1
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX530900
GSM1377428: E4F1 ChIP in mESC; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
E4f1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
mESC, E4F1 ChIP
strain/background
129Sv/J
tissue
embryo
cell type
embryonic stem cells
chip antibody
rabbit polyclonal anti-E4F1
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Input and immunoprecipitated DNA were purified and prepared for Illumina/Solexa sequencing following their standard protocol.
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
34707929
Reads aligned (%)
53.5
Duplicates removed (%)
30.7
Number of peaks
684 (qval < 1E-05)
mm9
Number of total reads
34707929
Reads aligned (%)
53.3
Duplicates removed (%)
30.8
Number of peaks
772 (qval < 1E-05)
Base call quality data from
DBCLS SRA