Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHC1

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Mouse embryonic stem cells with human HEK293T cells spike-in, untreated control, PHC1 ChIP-seq
cell line
Pcgf4-/-;Pcgf2fl/fl
replicate
1
treatment agent
none
treatment time point
0 hr
clone
8-1
spike-in reference organism
Homo sapiens
spike-in cell line
HEK293T
ChIP
PHC1
antibody
Cell Signalling 1F3F3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
32394231
Reads aligned (%)
9.7
Duplicates removed (%)
5.5
Number of peaks
456 (qval < 1E-05)

hg38

Number of total reads
32394231
Reads aligned (%)
9.9
Duplicates removed (%)
5.5
Number of peaks
480 (qval < 1E-05)

Base call quality data from DBCLS SRA