Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
wild-type cells - anti-H3K36me3
cell type
Late embryonic derived S2 cells
cell line
S2 Schneider cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard chromatin extraction procedures were utilized for ChIP analysis using anti-Beaf32 or anti-IgG control antibodies ChIP samples were prepared for sequencing using standard Illumina protocols of ChIP sample prep kits from 12 ng of starting precipitated DNA to generate sequencing libraries

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
30181637
Reads aligned (%)
97.5
Duplicates removed (%)
41.7
Number of peaks
12924 (qval < 1E-05)

dm3

Number of total reads
30181637
Reads aligned (%)
97.7
Duplicates removed (%)
40.5
Number of peaks
13729 (qval < 1E-05)

Base call quality data from DBCLS SRA