Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TEAD4

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D
cell line
T47D
cell type
Breast cancer cell line
treatment
Veh
chip antibody
TEAD4 (Santa Cruz, sc-101184)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody or by streptavidin magnet beads pull-down. The extracted ChIP DNA was ligated to specific adaptors of KAPA Hyper Prep system (KK8504), according to the manufacturer's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 3000

hg19

Number of total reads
20351771
Reads aligned (%)
78.6
Duplicates removed (%)
17.8
Number of peaks
11486 (qval < 1E-05)

hg38

Number of total reads
20351771
Reads aligned (%)
80.2
Duplicates removed (%)
16.9
Number of peaks
11470 (qval < 1E-05)

Base call quality data from DBCLS SRA