SRX5286307
GSM3577146: LNCaP-95: DHT ARE 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
human prostate cancer cell line
tissue
human prostate cancer cell line
cell line
LNCaP-95
passages
9-12
chip antibody
AR (06-680, Millipore, lot #3071905)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell lysates were sonicated and AR antibody used to isolate AR-DNA complexes Libraries were prepared following Illumina protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
33104272
Reads aligned (%)
95.6
Duplicates removed (%)
20.6
Number of peaks
62461 (qval < 1E-05)

hg38

Number of total reads
33104272
Reads aligned (%)
96.9
Duplicates removed (%)
18.6
Number of peaks
62690 (qval < 1E-05)

Base call quality data from DBCLS SRA