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Peak-call (q < 1E-05)
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For hg38
BigWig
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Peak-call (q < 1E-10)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: KDM1A
wikigenes
PDBj
CellType: PC-3
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX527430
GSM1374122: LSD1, ChIPseq, PC-3M-luc cells, biological replicate 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
KDM1A
Cell type
Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
PC-3M-luc cells
cell line
PC-3M-luc
cell type
human prostate carcinoma cell line
genotype
Control
passages
17-20
chip antibody
LSD1
chip antibody vendor
Abcam
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
PMID: 18066052 Libraries were prepared from immunoprecipitated DNA according to standard methods. ChIP-seq libraries were sequenced using a HiSeq 2000 (Illumina) and mapped to the hg19 reference genome using bowtie 2 PMID:19261174
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
31603654
Reads aligned (%)
93.5
Duplicates removed (%)
4.0
Number of peaks
12475 (qval < 1E-05)
hg38
Number of total reads
31603654
Reads aligned (%)
95.1
Duplicates removed (%)
3.0
Number of peaks
12463 (qval < 1E-05)
Base call quality data from
DBCLS SRA