SRX5236338
GSM3557986: Input siRNA HUVEC; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
human umbilical vein endothelial cells
cell type
Pooled HUVEC
passage
4 to 6
treatment
control
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin samples were prepared by Active Motif Services. Libraries were prepared by Active Motif Services.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32361899
Reads aligned (%)
94.9
Duplicates removed (%)
7.6
Number of peaks
1571 (qval < 1E-05)

hg19

Number of total reads
32361899
Reads aligned (%)
94.2
Duplicates removed (%)
9.0
Number of peaks
1442 (qval < 1E-05)

Base call quality data from DBCLS SRA