Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
human umbilical vein endothelial cells
cell type
Pooled HUVEC
passage
4 to 6
treatment
control siRNA treated
chip antibody
MED1 (A300-793A, Bethyl Laboratories)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin samples were prepared by Active Motif Services. Libraries were prepared by Active Motif Services.

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
37170974
Reads aligned (%)
85.7
Duplicates removed (%)
12.0
Number of peaks
4666 (qval < 1E-05)

hg38

Number of total reads
37170974
Reads aligned (%)
86.6
Duplicates removed (%)
11.5
Number of peaks
4670 (qval < 1E-05)

Base call quality data from DBCLS SRA