SRX5236335
GSM3557983: H3K27ac siERG HUVEC; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
human umbilical vein endothelial cells
cell type
Pooled HUVEC
passage
4 to 6
treatment
ERG siRNA treated
chip antibody
H3K27ac (cat no. 39133, Active Motif)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin samples were prepared by Active Motif Services. Libraries were prepared by Active Motif Services.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33513400
Reads aligned (%)
98.4
Duplicates removed (%)
10.1
Number of peaks
43212 (qval < 1E-05)

hg19

Number of total reads
33513400
Reads aligned (%)
98.1
Duplicates removed (%)
10.4
Number of peaks
43112 (qval < 1E-05)

Base call quality data from DBCLS SRA