Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCC1

Cell type

Cell type Class
Kidney
Cell type
TTC1240
NA
NA

Attributes by original data submitter

Sample

source_name
TTC1240
cell type
tumor cell line
cell line
TTC1240
lentivirus
SMARCB1 delCC (Y326*)
chip antibody
SMARCC1/BAF155 (Cell Signaling Tech., 11956S (D7F8S), lot: 2)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
45177772
Reads aligned (%)
82.8
Duplicates removed (%)
15.1
Number of peaks
42406 (qval < 1E-05)

hg38

Number of total reads
45177772
Reads aligned (%)
84.1
Duplicates removed (%)
14.4
Number of peaks
42643 (qval < 1E-05)

Base call quality data from DBCLS SRA