Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCC1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
SAH
cell type
induced pluripotent stem cell line
cell line
SAH
genotype
wild type
chip antibody
SMARCC1/BAF155 (Cell Signaling Tech., 11956S (D7F8S), lot: 2)
time
day 0

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
21767645
Reads aligned (%)
82.5
Duplicates removed (%)
15.1
Number of peaks
16233 (qval < 1E-05)

hg38

Number of total reads
21767645
Reads aligned (%)
83.4
Duplicates removed (%)
14.6
Number of peaks
16293 (qval < 1E-05)

Base call quality data from DBCLS SRA