Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Androgen dependent prostate cancer cell line
cell line
LNCaP-FGC
cell type
Androgen dependent prostate cancer cell line
treatment
DMSO
chip antibody
p300 (Developmental Studies Hybridoma Bank, University of Iowa, ENCITp300-1)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
24046934
Reads aligned (%)
88.9
Duplicates removed (%)
6.1
Number of peaks
917 (qval < 1E-05)

hg38

Number of total reads
24046934
Reads aligned (%)
91.1
Duplicates removed (%)
5.0
Number of peaks
1113 (qval < 1E-05)

Base call quality data from DBCLS SRA