SRX5199670
GSM3538381: p300 ICBP112 1 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Androgen dependent prostate cancer cell line
cell line
LNCaP-FGC
cell type
Androgen dependent prostate cancer cell line
treatment
ICBP112
chip antibody
p300 (Developmental Studies Hybridoma Bank, University of Iowa, ENCITp300-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin shearing followed by p300 immunoprecipitation. Swift Biosciences Accel-NGS 2S

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
16757681
Reads aligned (%)
90.2
Duplicates removed (%)
19.1
Number of peaks
859 (qval < 1E-05)

hg38

Number of total reads
16757681
Reads aligned (%)
91.3
Duplicates removed (%)
17.5
Number of peaks
982 (qval < 1E-05)

Base call quality data from DBCLS SRA