SRX5199668
GSM3538379: input DNA 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Androgen dependent prostate cancer cell line
cell line
LNCaP-FGC
cell type
Androgen dependent prostate cancer cell line
treatment
DMSO
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin shearing followed by p300 immunoprecipitation. Swift Biosciences Accel-NGS 2S

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12203341
Reads aligned (%)
95.8
Duplicates removed (%)
7.4
Number of peaks
672 (qval < 1E-05)

hg19

Number of total reads
12203341
Reads aligned (%)
94.7
Duplicates removed (%)
8.5
Number of peaks
628 (qval < 1E-05)

Base call quality data from DBCLS SRA