Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSCs
cell type
iPSCs
treatment
input
donor
2
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
5771080
Reads aligned (%)
92.0
Duplicates removed (%)
1.0
Number of peaks
482 (qval < 1E-05)

hg19

Number of total reads
5771080
Reads aligned (%)
88.5
Duplicates removed (%)
1.8
Number of peaks
396 (qval < 1E-05)

Base call quality data from DBCLS SRA