Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSCs
cell type
iPSCs
treatment
DMSO
donor
2
chip antibody
H3K4me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
12852406
Reads aligned (%)
89.7
Duplicates removed (%)
1.5
Number of peaks
28221 (qval < 1E-05)

hg19

Number of total reads
12852406
Reads aligned (%)
89.6
Duplicates removed (%)
1.5
Number of peaks
28101 (qval < 1E-05)

Base call quality data from DBCLS SRA