SRX5195515
GSM3537127: i20-H3K4me1-CBP30-3 S8; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSCs
cell type
iPSCs
treatment
CBP-30
donor
3
chip antibody
H3K4me1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43551598
Reads aligned (%)
89.5
Duplicates removed (%)
2.7
Number of peaks
125242 (qval < 1E-05)

hg19

Number of total reads
43551598
Reads aligned (%)
89.4
Duplicates removed (%)
2.7
Number of peaks
124933 (qval < 1E-05)

Base call quality data from DBCLS SRA