SRX518332
GSM1370110: Control Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14Tg2a ES Cells
cell type
Embryonic stem cells
strain
129/Ola
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Input and ChIP DNA were size-selected (~200-500nt). Libraries were prepared from size-selected Input and ChIP DNA according to the standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24354144
Reads aligned (%)
90.5
Duplicates removed (%)
17.4
Number of peaks
578 (qval < 1E-05)

mm9

Number of total reads
24354144
Reads aligned (%)
90.3
Duplicates removed (%)
17.4
Number of peaks
649 (qval < 1E-05)

Base call quality data from DBCLS SRA