Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
4175-LM2
NA
NA

Attributes by original data submitter

Sample

source_name
LM2-4175 cell line
tissue
breast cancer cell line
cell line
LM2-4175
chip antibody
H3K4me3
antibody vendorname
Abcam
antibody vendorid
#8580
treatment
None

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
31385737
Reads aligned (%)
99.3
Duplicates removed (%)
24.7
Number of peaks
22366 (qval < 1E-05)

hg19

Number of total reads
31385737
Reads aligned (%)
99.2
Duplicates removed (%)
24.8
Number of peaks
22315 (qval < 1E-05)

Base call quality data from DBCLS SRA